PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g061950.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 174aa    MW: 20138.1 Da    PI: 9.3256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g061950.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.94.6e-121559145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        k ien++ r v+fskR+++++  A+   + ++a+v v++fs++gk
  Sopim09g061950.0.1 15 KLIENERARMVSFSKRKKTLFEDAHKFATRTGADVGVMLFSPSGK 59
                        569*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.381767IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-15766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-19895IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-8929IPR002100Transcription factor, MADS-box
PfamPF003194.5E-171762IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MENENKKGKQ KIEMKLIENE RARMVSFSKR KKTLFEDAHK FATRTGADVG VMLFSPSGKP  60
YSNDSATIAD IIDRFLKVKQ EDHKRDYAEG ESNGFEALKD LHKELQAWND KEKKRKLMHK  120
IMHPSLEIPS DKHMEEQKLA LKLKVEKFKN EIQSAITTEH LKFDLNVVPD PEE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247303.11e-124agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7I4P31e-123A0A3Q7I4P3_SOLLC; Uncharacterized protein
STRINGSolyc09g061950.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-16AGAMOUS-like 29