PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g075610.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 90aa    MW: 9817.73 Da    PI: 10.4415
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g075610.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-19438135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        Cs C+tt+TplWR+gp+g+k+LCnaCG++y kk++
  Sopim09g075610.0.1  4 CSYCHTTTTPLWRSGPSGPKSLCNACGIKYNKKRR 38
                        9*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.02152IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-12252IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-16252IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.55E-14340No hitNo description
CDDcd002025.19E-13353No hitNo description
PfamPF003203.0E-17438IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MKSCSYCHTT TTPLWRSGPS GPKSLCNACG IKYNKKRRQI LGVEKKRRIE KKSIEIGKLM  60
GFGGKLREEE QAAILLMALS CGSVGKLLC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-109HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247383.18e-59GATA transcription factor 23-like
SwissprotQ9FJ102e-20GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A3Q7I7N82e-57A0A3Q7I7N8_SOLLC; Uncharacterized protein
STRINGSolyc09g075610.2.17e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.18e-20GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]