PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g089590.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 198aa    MW: 21916.6 Da    PI: 8.4697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g089590.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-054668123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Sopim09g089590.0.1 46 YTCSFCKREFKSAQALGGHMNVH 68
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-64372No hitNo description
PfamPF139121.5E-64669IPR007087Zinc finger, C2H2
SMARTSM003550.00324668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1774673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEKNSSKYFN KHQTMKNVKE YSWDNNYVDH QGGDLVGGFL WPPRSYTCSF CKREFKSAQA  60
LGGHMNVHRR DRARLRLQSP TILESNPNPN SNPNPNPSFV SSPSSPSTKL FPPFVSTLPP  120
LLSPNSFSSS TAAGGGSHEM KNGDLTKMGS AKFEENGKEC SEVVKRSEFL RLDLGIGLIS  180
ESKDDLDLDL ELRLGYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-144168229superman protein
2l1o_A5e-144168229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247918.11e-145transcriptional regulator SUPERMAN-like
TrEMBLA0A3Q7I8931e-143A0A3Q7I893_SOLLC; Uncharacterized protein
STRINGSolyc09g089590.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.17e-26C2H2 family protein