PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g008780.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 583aa    MW: 66240.8 Da    PI: 8.1236
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g008780.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP66.49.7e-21102235166
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                         a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++a++ai +l +                           
  Sopim10g008780.0.1 102 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAQRAINALEKApfqvfsnkinstnkalnvrnvenevg 192
                         589**************************************************************88888776665555555555555555 PP

                 TCP  66 ..........................................s 66 
                                                                   +
  Sopim10g008780.0.1 193 qfaleqswsadkkmeleelarhssklnatvqystdqfpegcyK 235
                         5555544444444444433333333333333333222222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-19103235IPR005333Transcription factor, TCP
PROSITE profilePS5136927.683105163IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MKHHLEVSNE NEDKSSSSSQ QDDDDDENKD EFFQEILQSD YQHMQQWPNY FTPPSSTLVP  60
KKQNNTQCPS HKEETKKVSL KRKPKRAKQD VMEVHGSRIV RATGRKDRHS KVSTATGPKD  120
RRVRLSPNTA IQFYDVQDRL GYDRPSKAID WLIKEAQRAI NALEKAPFQV FSNKINSTNK  180
ALNVRNVENE VGQFALEQSW SADKKMELEE LARHSSKLNA TVQYSTDQFP EGCYKEQSSK  240
VCQANATQIV NSSANGSKIQ SFCQIQTHPQ AHLHSQTKRQ SPNDAKIQSF CEYQTHPQSH  300
FHSQTKKQSP NVAKTLSFCE MQTPSQGHFH SQTKNQPTND AKIQSFCQLQ THPQSHFQSE  360
TKNQSPNVAK IQSFGELQTT PQSHFHSQTQ KQSTNDAKIQ SFCELQTHPQ GHFHSETKNQ  420
SPNVAKVQSF CELQTHPQSH FQSETKKQSP NVAKIQSFCE LQTPPLSHFQ SETKNQSTQL  480
GNFFSFQSCH QNEPISFSGD HHHGFSFSPQ NFPTVLGQNQ MFNYQREPLQ STSNFPQTIS  540
YSNNIGFAND GLLGLSSAPI TQQQQQQDEQ GSISTTLLHY QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-18110163154Putative transcription factor PCF6
5zkt_B5e-18110163154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7ICJ60.0A0A3Q7ICJ6_SOLLC; Uncharacterized protein
STRINGSolyc10g008780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1556966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-34TCP domain protein 10