PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g012180.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18824.5 Da    PI: 5.3835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g012180.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36.4e-1124501440
                        HHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF 14 skRrngilKKAeELSvLCdaevaviif 40
                        sk ++ ++KKA+ LS+LC+++va+ii+
  Sopim10g012180.0.1 24 SKMQKALFKKASDLSILCGIQVAIIIL 50
                        778899*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-112385IPR002100Transcription factor, MADS-box
PfamPF003191.1E-82450IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.6852463IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MESKNSNVDS AVAKDKRGEG GKISKMQKAL FKKASDLSIL CGIQVAIIIL FINRQPIVFG  60
KPDAESVINQ FIEANHPTAP RFYMKMKKKE EENKEKGKSI EDDIQSQDFE SPYLGSLLKL  120
YEGLTEFENQ LTKEIDLTQL NQEIEKHEDP KLMNVASSST LPTNFSP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448870.0AC244887.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6i2 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248433.11e-119uncharacterized protein LOC101244040
TrEMBLA0A3Q7IDC81e-118A0A3Q7IDC8_SOLLC; Uncharacterized protein
STRINGSolyc10g012180.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-11AGAMOUS-like 62