PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g018080.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17218.5 Da    PI: 7.0442
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g018080.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.66.7e-131665251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +ien+s r +tfskRr g+ K A EL   Cd++  +++ s++g  y +ss
  Sopim10g018080.0.1 16 KIENESARLTTFSKRRSGLYKIACELVRECDVDLGIVMSSPKGIPYSFSS 65
                        79*****************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.339767IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-10766IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-9929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-161078IPR002100Transcription factor, MADS-box
PfamPF003194.1E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEHKKTAGCQ KTSLAKIENE SARLTTFSKR RSGLYKIACE LVRECDVDLG IVMSSPKGIP  60
YSFSSQTSNV VINHFINPTA KLSSSDHLVA SEARKRVSQF NDILNELDER EKIANEKLDQ  120
MNEARDLGWW ESIDRLNVHD VMKLEAWLNL H*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682370.0CU468237.3 S.lycopersicum DNA sequence from clone LE_HBa-303A6, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768133.11e-94agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7ICS41e-108A0A3Q7ICS4_SOLLC; Uncharacterized protein
STRINGSolyc10g018080.1.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-18AGAMOUS-like 29