PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g018710.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 172aa    MW: 19746.5 Da    PI: 10.279
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g018710.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.51.5e-3149144189
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                         a+g+k rhsk++T++g++dRRvRls + a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s+  ++++ + s ++++ +  
  Sopim10g018710.0.1  49 ATGRKYRHSKVSTAKGPKDRRVRLSPNAAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALCEFPNNFHSSKlNPKKMQYSFDQEQCPef 139
                         589*************************************************************944444333456666665554444433 PP

                 TCP  89 ....k 89 
                             +
  Sopim10g018710.0.1 140 sqenR 144
                         32222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2950138IPR005333Transcription factor, TCP
PROSITE profilePS5136927.78352110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPQSLCKKPE KWANFTVSKQ ELNKGTRRMK QKRAKTDVIE GHGGRTIRAT GRKYRHSKVS  60
TAKGPKDRRV RLSPNAAIQF YDVQDRLGYD RPSKAIDWLI KEAKAAIDAL CEFPNNFHSS  120
KLNPKKMQYS FDQEQCPEFS QENRGVPNSE CGVQDKQQEV NYHIPILFSL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1957110154Putative transcription factor PCF6
5zkt_B6e-1957110154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632RRMKQKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2447670.0AC244767.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-66a15 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.11e-115transcription factor TCP10-like
TrEMBLA0A3Q7J8J01e-126A0A3Q7J8J0_SOLLC; Uncharacterized protein
STRINGSolyc10g018710.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-35TCP domain protein 10