PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g019150.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 165aa    MW: 18552.1 Da    PI: 9.8254
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g019150.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.6e-1356101247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++WT++E+  ++++   +G+g+W++Ia+ +   Rt  q+ s+ qky
  Sopim10g019150.0.1  56 NPWTEDEQIAFLKGLDFHGKGSWSKIAKDFVPSRTSTQVASHAQKY 101
                         69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.13650106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-1152103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1353104IPR006447Myb domain, plants
SuperFamilySSF466897.03E-1453105IPR009057Homeodomain-like
SMARTSM007177.7E-1054104IPR001005SANT/Myb domain
PfamPF002493.9E-1156101IPR001005SANT/Myb domain
CDDcd001672.64E-1057102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MERNCTVCGG NGHNQRTCSE KGKSIKLFGV EITTASSAGG AMSKKDSMER RIKRGNPWTE  60
DEQIAFLKGL DFHGKGSWSK IAKDFVPSRT STQVASHAQK YFMRLLDANE RKYHKKSSVF  120
DLRLDQLEDT HDHAIVPLGN NYESQNVPSV IPNYYMMKRV LPLN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2424880.0AC242488.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-72f2 map 10, complete sequence.
GenBankAC2424940.0AC242494.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-40l2 map 10, complete sequence.
GenBankAC2428280.0AC242828.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-21d10 map 10, complete sequence.
GenBankAC2453730.0AC245373.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-58c22 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015054810.11e-119transcription factor MYBS3-like
TrEMBLA0A3Q7IDB21e-122A0A3Q7IDB2_SOLLC; Uncharacterized protein
STRINGSolyc10g019150.1.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-28MYB_related family protein