PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g047060.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 213aa MW: 24644.2 Da PI: 6.3085

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g047060.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.3	3.1e-36	20	139	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGf F P+deel+v++L++k++ +++ +vi+++++++++PwdL+ k+ ++ ++wyf+s+r + +++r+t++gyWk+ g d++ Sopim10g047060.0.1 20 LPPGFWFCPSDEELIVHFLHRKISLLPFHP-DVIPDLHLHSYDPWDLDGKAMSGGNKWYFYSRRTH------ETTRITSNGYWKSLGVDET 103 79***********************999.99**********977778899**9977......5789*********** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +ls+++++ g+kk +fy g+ p+g+kt+W+m+ey+ Sopim10g047060.0.1 104 ILSTSNHNLGMKKYYTFYMGQPPQGHKTNWLMQEYS 139 *********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-45	15	179	IPR003441	NAC domain
PROSITE profile	PS51005	41.832	20	180	IPR003441	NAC domain
Pfam	PF02365	7.0E-20	21	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGDNNNNNNN NNNNNNHVKL PPGFWFCPSD EELIVHFLHR KISLLPFHPD VIPDLHLHSY 60 DPWDLDGKAM SGGNKWYFYS RRTHETTRIT SNGYWKSLGV DETILSTSNH NLGMKKYYTF 120 YMGQPPQGHK TNWLMQEYSH ISHSSPSSSS SRRRRSQSKI VCPLSFHDYS KWVICRVYES 180 NSCDSDENEL SCLDEVFLSL DDLDDDEISL PH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-36	16	182	16	170	NAC domain-containing protein 19
3swm_B	2e-36	16	182	16	170	NAC domain-containing protein 19
3swm_C	2e-36	16	182	16	170	NAC domain-containing protein 19
3swm_D	2e-36	16	182	16	170	NAC domain-containing protein 19
3swp_A	2e-36	16	182	16	170	NAC domain-containing protein 19
3swp_B	2e-36	16	182	16	170	NAC domain-containing protein 19
3swp_C	2e-36	16	182	16	170	NAC domain-containing protein 19
3swp_D	2e-36	16	182	16	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	1e-167	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248807.2	1e-114	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	4e-68	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A3Q7IER4	1e-155	A0A3Q7IER4_SOLLC; Uncharacterized protein
STRING	Solyc10g047060.1.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-57	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]