PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g050900.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19796.5 Da    PI: 7.8342
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g050900.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.74.5e-111563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien+     +fskRrng++K A+ L    d+++ +i+fs+tgk + y
  Sopim10g050900.0.1 15 KKIENEKALLSSFSKRRNGLFKAANNLVKKFDVDIGIIVFSPTGKPHSY 63
                        6899999999**********************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.46767IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-17766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-19878IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-10929IPR002100Transcription factor, MADS-box
PfamPF003192.6E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-102944IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-104465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MENKKTKGRQ KIPMKKIENE KALLSSFSKR RNGLFKAANN LVKKFDVDIG IIVFSPTGKP  60
HSYFHPTVDA VISRFQNPDM QLSDETHLAM IFARNSVNQL EKKLEELDIQ EKIEIDRTNY  120
LDQMTETRQK GWWESIEQLN EDEVSKFEEW LNVASFTMHY RLNQSIVSS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248901.11e-123agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7JBP71e-122A0A3Q7JBP7_SOLLC; Uncharacterized protein
STRINGSolyc10g050900.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-24AGAMOUS-like 57