PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g050940.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19623.3 Da    PI: 7.7667
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g050940.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.39.6e-091963549
                        SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        n+     +fskRr g++K A+ L    d+++ +i+f++tgk y +
  Sopim10g050940.0.1 19 NEKALLSSFSKRRDGLFKVANNLVKEFDVDIGIIVFAPTGKPYSF 63
                        55555679*********************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-13766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.199767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-17878IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-7929IPR002100Transcription factor, MADS-box
PfamPF003191.2E-141763IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-72944IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-74465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MENKKAKGRQ KIPMKKMKNE KALLSSFSKR RDGLFKVANN LVKEFDVDIG IIVFAPTGKP  60
YSFFHPTADA VISRFQNPDT QLSDETHLAM VFAQNSVNQL EKKLEELDIK EKIESDRTNY  120
LDQMTETRQK GWWESIEQLN EDEVSKFEAW LNVASFTMHY RLNQSIVSS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248900.11e-123agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7JBP71e-111A0A3Q7JBP7_SOLLC; Uncharacterized protein
STRINGSolyc10g050940.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-21AGAMOUS-like 62