PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g053890.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 167aa    MW: 19249.4 Da    PI: 6.7581
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g053890.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.66.9e-1627118199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+     + ++ l++p k a++ ++   ++ ++++ed+ gr+W  ++  +++ g+  +++GW +F  +++Lk+g+f+vF++++ ++ +
  Sopim10g053890.0.1  27 FFKVM--ILETFLQVLCFPPKIARSVSYL--TDLEISFEDSYGRRWMATV--CNYNGSLAIRQGWDKFSAEHDLKVGEFLVFHYVS-DDLN 110
                         55666..3334445689999999999877..4568***************..********************************98.6777 PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                         + v++f +
  Sopim10g053890.0.1 111 FIVQIFGT 118
                         79999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.8E-1923121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.80125119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-1726121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-1326116No hitNo description
SMARTSM010191.3E-827119IPR003340B3 DNA binding domain
PfamPF023621.2E-1327117IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKLLEMMGAF YDNEDGLLIN GKKVISFFKV MILETFLQVL CFPPKIARSV SYLTDLEISF  60
EDSYGRRWMA TVCNYNGSLA IRQGWDKFSA EHDLKVGEFL VFHYVSDDLN FIVQIFGTSG  120
CEKIKFSCNI GKEKPKERSY QEITTTEECQ SGKLFVHKFF RVILFL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159850.15e-71PREDICTED: B3 domain-containing protein Os02g0598200-like
TrEMBLA0A3Q7IGZ01e-118A0A3Q7IGZ0_SOLLC; Uncharacterized protein
STRINGSolyc10g053890.1.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-08B3 family protein