PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g054070.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 188aa MW: 21404.2 Da PI: 8.9206

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g054070.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	167.5	7.1e-52	14	145	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 s++++C+dCGnqakkdC + RCRtCCk+rg++C+thvkstW+p++ rr+r+++ +++ ++ ++kr+r + al +t Sopim10g054070.0.1 14 SNNKRCEDCGNQAKKDCLYFRCRTCCKTRGYQCQTHVKSTWIPISTRRSRHHHPSSTV-------QQPNPKRHRPN-----HALLQTG--- 89 56789******************************************966655543.......33345555543.....3333333... PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 e e+++lP+evs +a+frcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG + Sopim10g054070.0.1 90 -G---EEEKEELPSEVSLPAIFRCVRVSSVDNMVDQYAYQTSVNIAGHVFKGILYDQGNN 145 .2...345678*********************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-52	17	145	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.3E-26	19	60	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.0E-25	97	143	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MMMREDEGIV ISSSNNKRCE DCGNQAKKDC LYFRCRTCCK TRGYQCQTHV KSTWIPISTR 60 RSRHHHPSST VQQPNPKRHR PNHALLQTGG EEEKEELPSE VSLPAIFRCV RVSSVDNMVD 120 QYAYQTSVNI AGHVFKGILY DQGNNMPNQT SSRGFHQQQL TNFTPPISTT YPTFMPGMQL 180 FQYPKSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245809	1e-167	AC245809.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-60l14 map 10, complete sequence.
GenBank	HG975522	1e-167	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248882.1	1e-141	protein SHI RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9LQZ5	4e-44	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	K4D105	1e-140	K4D105_SOLLC; Uncharacterized protein
STRING	Solyc10g054070.1.1	1e-140	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	3e-35	SHI-related sequence3

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]