PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g079220.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 328aa    MW: 36996 Da    PI: 4.9153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g079220.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.29.8e-21101263128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                          G+rF+Ptde+l+ +yL k v +k+  + + i+  ++y + +Pw+L    + ++   yfF+k +k+    +r +r  +  g Wk + k k+
  Sopim10g079220.0.1  10 LGVRFRPTDEQLI-RYLIKFVVSKNYVC-KDIEFEELYGSkKPWELL---EDSSGTKYFFTKLKKRD---TRFSRtLVGGGSWKGKSKGKS 92 
                         69***********.99*****9999888.5588888887659****6...3344577****998865...68888667899***9999999 PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +   +++g+kkt  + ++++   +  +W+m+ey+l
  Sopim10g079220.0.1  93 IGA---KKIGMKKTYNYEENKKDVVNDVSWIMKEYSL 126
                         977...88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-205153IPR003441NAC domain
PROSITE profilePS5100524.5848153IPR003441NAC domain
PfamPF023652.4E-1611126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAIESPDAEL GVRFRPTDEQ LIRYLIKFVV SKNYVCKDIE FEELYGSKKP WELLEDSSGT  60
KYFFTKLKKR DTRFSRTLVG GGSWKGKSKG KSIGAKKIGM KKTYNYEENK KDVVNDVSWI  120
MKEYSLDDKV IKLLSNRGVM KHKDVVLCYI RCKVKKSRNH MPTTTGSGYD DGDGDDTLLL  180
PQGPNEFGYG DQFPQQIVNP MQNVGSGYVG CDDTLVPQGP NEFGYSDQLP QQIVKPMQNI  240
ESGYVGCDDE NRNDMTTQPQ WPMEDHQLSQ LIVTFPMVQG NDAAMNEGNM NGELVFPYQE  300
EQVLQNVEET AGMAISVALL VYFLSTM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154870.0AC215487.4 Solanum lycopersicum cultivar Heinz 1706 chromosome 0 clone C00SLm0076E07, complete sequence.
GenBankAC2547470.0AC254747.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-9o12 map 10, complete sequence.
GenBankEF0949390.0EF094939.1 Solanum lycopersicum cv. Heinz1706 BAC clone Le_HBa0072D08, complete sequence.
GenBankEF0949400.0EF094940.1 Solanum lycopersicum cv. Sun1642 phage lambda clones EK36, EK50, EK54, EK57, EK58, EK59, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312399.10.0NAC domain-containing protein 105
TrEMBLB1N6660.0B1N666_SOLLC; Uncharacterized protein
STRINGSolyc10g079220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1421348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-06NAC domain containing protein 2