PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g079680.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 194aa    MW: 22099.7 Da    PI: 10.408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g079680.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13357154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                        ++ +hn+ Er+RR+++N  +++Lr+llP+++ k ++kKls  +++  + eYI +L
  Sopim10g079680.0.1  3 KKLNHNASERNRRKKMNFLYSTLRSLLPPPTnKHQKKKLSFPATVSYVQEYIPEL 57
                        6789*************************665888888**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.986257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-8262No hitNo description
SuperFamilySSF474596.94E-13273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-11262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-6863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEKKLNHNAS ERNRRKKMNF LYSTLRSLLP PPTNKHQKKK LSFPATVSYV QEYIPELKKE  60
IERLSKTKDL LLSKKSNYSL LKIDDNNKRK LIIGGTSCNS STTSICASQL SNSQVLVQIS  120
TTQENNFPIS QVFASVEEDG LILLNASSFK SFGDKIFHSL HFQMQGPIEM DIQVLKTKLL  180
VMCEKRRKNS YIV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249750.21e-138transcription factor bHLH100
TrEMBLA0A3Q7IL291e-136A0A3Q7IL29_SOLLC; Uncharacterized protein
STRINGSolyc10g079680.1.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-35bHLH family protein