PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g080300.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 125aa MW: 14699.5 Da PI: 6.3945

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g080300.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.3e-09	64	115	1	46
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 +++WT+ E+e l+++ ++ +Wk+I g kgRt+ ++k++w++ Sopim10g080300.0.1 64 KLPWTKMEEETLKEGLLRFSHFhdRWKRILDFGGdvfmKGRTPGDLKDKWRN 115 689*************985499************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.422	59	117	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.3E-10	59	121	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.16E-10	60	118	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-4	63	119	IPR001005	SANT/Myb domain
Pfam	PF00249	7.6E-6	65	115	IPR001005	SANT/Myb domain
CDD	cd11660	7.39E-10	66	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MHAEVTQVHP PQPHVPHEHV CQESSSIEVS SEEEQDEIGS GYLVQFRNQE NNFCPWIPQM 60 RRKKLPWTKM EEETLKEGLL RFSHFHDRWK RILDFGGDVF MKGRTPGDLK DKWRNISKAD 120 EKET*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	1e-80	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249272.1	1e-85	uncharacterized protein LOC101258507 isoform X1
Refseq	XP_010312132.1	1e-85	uncharacterized protein LOC101258507 isoform X1
Refseq	XP_010312133.1	1e-85	uncharacterized protein LOC101258507 isoform X1
Refseq	XP_019071606.1	7e-86	uncharacterized protein LOC101258507 isoform X2
Refseq	XP_025883755.1	1e-85	uncharacterized protein LOC101258507 isoform X1
TrEMBL	A0A3Q7IKX5	2e-84	A0A3Q7IKX5_SOLLC; Uncharacterized protein
STRING	Solyc10g080300.1.1	8e-89	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3406	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	4e-08	telomere repeat binding factor 3