PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g081840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YA
Protein Properties Length: 155aa    MW: 17993.6 Da    PI: 10.9266
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g081840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA80.72.5e-2558112258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          p++VNaKQy++Il+RR+ Rak  e++ l  k rkp+lh SRh hA+rRpRg gGrF
  Sopim10g081840.0.1  58 TPIFVNAKQYHGILRRRKFRAKEIEKN-L-LKPRKPFLHLSRHLHAKRRPRGGGGRF 112
                         7********************977745.4.5*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.7E-2655115IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115228.77856115IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-2159112IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-195981IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-1989112IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MYINTGIYFR VILSMEQPMS FDSQSYNMDY QGHFDLGLFG QPLGRIMLPL NFTSHDETPI  60
FVNAKQYHGI LRRRKFRAKE IEKNLLKPRK PFLHLSRHLH AKRRPRGGGG RFLNTRKTDG  120
SINNDANGTT KTSNKKCHHT RSQNSEVLQW CIQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-1557125271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A7e-1557115262HAPB protein
4g92_A7e-1557115262HAPB protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547631e-105AC254763.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-63a14 map 10, complete sequence.
GenBankHG9755221e-105HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071719.11e-109nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBLA0A3Q7IMA92e-93A0A3Q7IMA9_SOLLC; Uncharacterized protein
STRINGSolyc10g081840.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-28nuclear factor Y, subunit A10