PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g084220.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 780aa MW: 89452.3 Da PI: 8.4024

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g084220.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.5	2.9e-20	59	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v++ ++gkw+++++++eHnH+l Sopim10g084220.0.1 59 EFYNLYATKIGFRIRIGQLYRSRIDGSVVSRRFVCSKEGFQTT--------------SRTGCPAFIRVQRLDSGKWVLANIKKEHNHDLE 134 6*************************************976..............589*************************996 PP
2	FAR1	64.7	2.5e-20	214	288	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+++A ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w v+++++eHnHel Sopim10g084220.0.1 214 EFYHTHAANTGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQESGRWLVDRFQNEHNHEL 288 6************************************9998..............4899*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-16	59	134	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.7E-16	214	288	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.0E-27	388	479	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.534	665	701	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.6E-8	671	698	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-8	676	703	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MSREEIVTTM TVRAKPVGGL AIATIVKNNG HHRDVEEEGE SRLEPNVGLE FDSAEDAQEF 60 YNLYATKIGF RIRIGQLYRS RIDGSVVSRR FVCSKEGFQT TSRTGCPAFI RVQRLDSGKW 120 VLANIKKEHN HDLEHPGEIC PSRIQRKIVT PTPTPKSKSA SIVVSTRTGL RSLDEDGPSG 180 ILDFKRLKRE KINGETRSEP YKGLEFVSAA EAYEFYHTHA ANTGFKVRIG QLFRSKNDGS 240 ITSRRFVCSK EGHQHPSRVG CGAFMRIQRQ ESGRWLVDRF QNEHNHELGA PIDASERVSS 300 KGFKEELSHG LENMDLVESN GGFSLVTRSR ESKIGSDWYN ELFDYFQARQ ADDMGFFYAV 360 EMHKGRAMSV LWADSRSRFS CTQFGDAIVF DTTYRRGSYS VPLASFIGVN HHRQPVLLGC 420 ALIAEESEES FTWLFQAWLR AMSGRRPISI VADQDWVIQH SIAQVFPGTH HRFSAWQVVA 480 KEQENIGALL SMNPEFKYEY ETSIFQSQTA NEFEAAWNVL INKYNLRENT WLKDMYRMRK 540 SWVPLYIKGT FFAGIPTDGS LKSYFGTLLT SQAPLSEFLI RYEKSLEQRR EEERKEDFNS 600 FNLQAVLHTK DPIEDQCRRL YTITMFKVFQ KELLECYSYV GIKINVEGAI SRYLVQKCGN 660 GDERHTVAFN ASNLNISCSC KMFEFEGVLC RHALKVFQIM NIRELPSRYI LHRWTKDAKY 720 GILRDVDSGG ASQDHKALML WSLREEAKNY IEAGTASLER YKLAFEIMQE GRRNLCWQN*

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MSREEIVTTM TVRAKPVGGL AIATIVKNNG HHRDVEEEGE SRLEPNVGLE FDSAEDAQEF  60
YNLYATKIGF RIRIGQLYRS RIDGSVVSRR FVCSKEGFQT TSRTGCPAFI RVQRLDSGKW  120
VLANIKKEHN HDLEHPGEIC PSRIQRKIVT PTPTPKSKSA SIVVSTRTGL RSLDEDGPSG  180
ILDFKRLKRE KINGETRSEP YKGLEFVSAA EAYEFYHTHA ANTGFKVRIG QLFRSKNDGS  240
ITSRRFVCSK EGHQHPSRVG CGAFMRIQRQ ESGRWLVDRF QNEHNHELGA PIDASERVSS  300
KGFKEELSHG LENMDLVESN GGFSLVTRSR ESKIGSDWYN ELFDYFQARQ ADDMGFFYAV  360
EMHKGRAMSV LWADSRSRFS CTQFGDAIVF DTTYRRGSYS VPLASFIGVN HHRQPVLLGC  420
ALIAEESEES FTWLFQAWLR AMSGRRPISI VADQDWVIQH SIAQVFPGTH HRFSAWQVVA  480
KEQENIGALL SMNPEFKYEY ETSIFQSQTA NEFEAAWNVL INKYNLRENT WLKDMYRMRK  540
SWVPLYIKGT FFAGIPTDGS LKSYFGTLLT SQAPLSEFLI RYEKSLEQRR EEERKEDFNS  600
FNLQAVLHTK DPIEDQCRRL YTITMFKVFQ KELLECYSYV GIKINVEGAI SRYLVQKCGN  660
GDERHTVAFN ASNLNISCSC KMFEFEGVLC RHALKVFQIM NIRELPSRYI LHRWTKDAKY  720
GILRDVDSGG ASQDHKALML WSLREEAKNY IEAGTASLER YKLAFEIMQE GRRNLCWQN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249494.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_010312262.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_019071660.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A3Q7JGE1	0.0	A0A3Q7JGE1_SOLLC; Uncharacterized protein
STRING	Solyc10g084220.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]