PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g013560.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 207aa    MW: 23058 Da    PI: 9.7382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g013560.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-135398247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +rWT++E+  ++++   +G+g+W+ Ia+ +   Rt+ q+ s+ qky
  Sopim11g013560.0.1 53 NRWTEDEQRAFLKGLDFHGKGNWTNIAKDFVPSRTPTQVASHAQKY 98
                        69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.37247103IPR017930Myb domain
SuperFamilySSF466892.24E-1549103IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-1450101IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.5E-115197IPR009057Homeodomain-like
SMARTSM007174.0E-1151101IPR001005SANT/Myb domain
PfamPF002494.3E-115398IPR001005SANT/Myb domain
CDDcd001676.93E-115499No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MARNCSEDEK SIKLFGFDIT TATTTITTTT TSSAATVISE KDFMGKKMIK KGNRWTEDEQ  60
RAFLKGLDFH GKGNWTNIAK DFVPSRTPTQ VASHAQKYFV RLSDANSNSN ERKKKRKKSS  120
VFDLRIEKTE DTDQAMVPLG NNQATHNVAN YMMKSVPTVM PLTWVYIYPN SYHHASTSIS  180
TTTLDKPISG ISSSSSSEDD ILELKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RKKKRKK
2113117KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2471350.0AC247135.8 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-6o7 map 11, complete sequence.
GenBankAC2540570.0AC254057.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-28f9 map 11, complete sequence.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312911.11e-151transcription factor SRM1-like
TrEMBLM1CNS82e-87M1CNS8_SOLTU; Uncharacterized protein
STRINGSolyc11g013560.1.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-20MYB family protein