PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g017210.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 85aa MW: 9821.24 Da PI: 8.9713

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g017210.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.3	5e-13	33	77	1	45
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 kfY +YA++ GFsvrk++ ++s++++ i+ ++fvCskeg+r ++ Sopim11g017210.0.1 33 KFYLDYAHRNGFSVRKNRISRSRKDKFIIGQEFVCSKEGFRLKKC 77 6***************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-11	33	77	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MNAVVSFVPQ LGEQELREPY IGMEFQSLDT GFKFYLDYAH RNGFSVRKNR ISRSRKDKFI 60 IGQEFVCSKE GFRLKKCNQA CNCD*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC171733	1e-140	AC171733.2 Solanum lycopersicum chromosome 11 clone C11HBa0034I10, complete sequence.
GenBank	CU457805	1e-140	CU457805.3 S.lycopersicum DNA sequence from clone SL_MboI-121I3, complete sequence.
GenBank	HG975523	1e-140	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068484.1	3e-46	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025884696.1	8e-48	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_025884722.1	4e-47	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025884850.1	4e-46	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025888960.1	5e-45	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7IST4	8e-56	A0A3Q7IST4_SOLLC; Uncharacterized protein
STRING	Solyc11g017210.1.1	2e-56	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-15	FAR1 family protein