PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g050730.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 202aa    MW: 22579.4 Da    PI: 10.0191
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g050730.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-1356101247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++WT++E+  ++++   +G+g+W++Ia+ +   Rt  q+ s+ qky
  Sopim11g050730.0.1  56 NPWTEDEQTAFLKGLDFHGKGNWSKIAKDFVPSRTSTQVASHAQKY 101
                         69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.47350106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-1251102IPR009057Homeodomain-like
SuperFamilySSF466892.47E-1453105IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-1453104IPR006447Myb domain, plants
SMARTSM007174.7E-1154104IPR001005SANT/Myb domain
PfamPF002492.1E-1156101IPR001005SANT/Myb domain
CDDcd001676.07E-1157102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MERNCTVCGG NGHNQRTCSE KGKSIKLFGV EITTTTSAGG AMSKKDSMER RVKKGNPWTE  60
DEQTAFLKGL DFHGKGNWSK IAKDFVPSRT STQVASHAQK YFMRLLGANE RKYHKKSSVF  120
DLRLDQLEDT HDHAIVPLGN NYKSQNVPSV VPNYYMMKRV LPLTWVYMYP YYHRDYASTS  180
ASATTFNKPL SGISSSSNSS S*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2470790.0AC247079.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone hba-30m22 map 11, complete sequence.
GenBankAC2471360.0AC247136.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-51n5 map 11, complete sequence.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250846.11e-152transcription factor MYBS3-like
TrEMBLA0A3Q7IWL81e-150A0A3Q7IWL8_SOLLC; Uncharacterized protein
STRINGSolyc11g050730.1.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-27MYB_related family protein