PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g066400.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 295aa MW: 31986.6 Da PI: 8.0268

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g066400.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Sopim11g066400.0.1 136 YECKTCNRTFNSFQALGGHRASH 158 99**********99999998887 PP
2	zf-C2H2	13.7	0.00019	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Sopim11g066400.0.1 212 HECSICGSEFSSGQALGGHMRRH 234 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.0E-13	135	160	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.8E-9	135	158	No hit	No description
PROSITE profile	PS50157	10.907	136	163	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.065	136	158	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.8E-9	207	234	No hit	No description
PROSITE profile	PS50157	9.951	212	239	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.8E-12	212	236	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	212	234	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	214	234	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MEVCQNLSER RSCAFKGKRT KRARPSSPLN TAGTTTTTTT ITTITTSSSI ACGSNDGSRG 60 VDGGDFFYNS PTTSTTQISK LSTCEEDEDM ANCLILLAQS GCGHKVEEVK KEKINNRKFA 120 EIANSSTTGK AGFFVYECKT CNRTFNSFQA LGGHRASHKK PKTILEDKKS VTDTTATATA 180 AADHDNLHDQ GQERLNKISN TTIQSNVKTK IHECSICGSE FSSGQALGGH MRRHRQPPTT 240 TMIAASNVSE SSHDEKSRRN VLCLDLNLPA PVEDDHKFEQ SLVFSAAPLV DCYF*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251369.1	0.0	zinc finger protein ZAT5
TrEMBL	A0A3Q7IZ65	0.0	A0A3Q7IZ65_SOLLC; Uncharacterized protein
STRING	Solyc11g066400.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-51	C2H2 family protein