PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g068480.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 176aa MW: 19895.3 Da PI: 4.6421

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g068480.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.3	1.9e-13	26	121	7	97
NF-YB 7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 lP + v r++k+ l +++ is +d+ e + fi ++++ a+d c++ kr+tin +d++ al ++ f + +eplk+ l+ +re Sopim11g068480.0.1 26 GLPKTIVRRLVKEKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINVEDVFKALEEIEFPELIEPLKASLEGFRE 116 578888888888765411156666644677888899******************************************************* PP NF-YB 93 legek 97 ++++ Sopim11g068480.0.1 117 KNSKR 121 88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.2E-31	17	162	IPR009072	Histone-fold
SuperFamily	SSF47113	1.32E-23	26	135	IPR009072	Histone-fold
Pfam	PF00808	4.3E-8	27	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAEIEKQNKE KEKVVAETTV QIDQEGLPKT IVRRLVKEKL SQLSTDTDIS LLRDSLLAFS 60 ESARIFIHYL SATANDICKE SKRQTINVED VFKALEEIEF PELIEPLKAS LEGFREKNSK 120 RKSTSSKSPE SNKKAKLKEP VENGKGKMKE QPSDNENEDA QAEEEVNEVE DRVDD*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC217004	1e-118	AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence.
GenBank	HG975523	1e-118	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251060.1	1e-121	DNA polymerase epsilon subunit 3
TrEMBL	A0A3Q7IZT6	1e-120	A0A3Q7IZT6_SOLLC; Uncharacterized protein
STRING	Solyc11g068480.1.1	1e-120	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	9e-30	nuclear factor Y, subunit B11