PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g005210.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 89aa    MW: 9985.65 Da    PI: 10.4073
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g005210.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.8e-1222501442
                        HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
                         kR + ++K A+ LS+LCd+ev vi+f++
  Sopim12g005210.0.1 22 DKRIEALFKQANDLSILCDIEVGVIVFGP 50
                        69*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-4160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.045149IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-13980IPR002100Transcription factor, MADS-box
PfamPF003196.9E-111851IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MTMKGVRSTR NVDPRMKKFI LDKRIEALFK QANDLSILCD IEVGVIVFGP GENNAVVWPS  60
LAQASDRVKN YLARHRDCKG KEVVNVRQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-147HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060034.16e-45MADS-box transcription factor 47-like
TrEMBLA0A3Q7J2542e-58A0A3Q7J254_SOLLC; Uncharacterized protein
STRINGSolyc12g005210.1.13e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-11AGAMOUS-like 96