PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g011260.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 236aa    MW: 26593.3 Da    PI: 7.144
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g011260.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.44.2e-15110163255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+ Wt++LH++Fv +v+  GG+    P++il+ m   g++  ++k  LQ YR 
  Sopim12g011260.0.1 110 PRMLWTEDLHREFVAVVDAYGGPWAVKPRHILKEMAHLGISHCQIKNRLQSYRA 163
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-9107166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-13108165IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-12110164IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MFPLPPSPVV KIGNFQSPII PTMQLRSDEL MSLQQSPFNY QPANDYSFLE NHGLMRLFGG  60
LNTINNNVVN YQDPFMFNPN VLNFNVAQQV QQELGQQPNN VGSTSRVKPP RMLWTEDLHR  120
EFVAVVDAYG GPWAVKPRHI LKEMAHLGIS HCQIKNRLQS YRAKLNPNDA GGRKYISKAS  180
SKKELIQDVQ EQLKNVDGGK VDDDVCVPQL PTEAKRMEAH ISPEDAFIEG LLNWI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884461.11e-59transcription factor HHO6-like
TrEMBLA0A3Q7J4J11e-157A0A3Q7J4J1_SOLLC; Uncharacterized protein
STRINGSolyc12g011260.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14605411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-10G2-like family protein