PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g017300.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17740.1 Da    PI: 5.1062
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g017300.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.21.9e-1221481340
                        HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                        + +R   ++KKAeELS+LCd+e+a+iif
  Sopim12g017300.0.1 21 LDRREISLFKKAEELSILCDVEAAIIIF 48
                        5567779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.811148IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-141393IPR002100Transcription factor, MADS-box
PfamPF003193.4E-111551IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MATKRLRDSR NYSENVRNSI LDRREISLFK KAEELSILCD VEAAIIIFRP GKIQPIAWKS  60
ASLAQDVLTR YLSFLEFKRL DKLVTHEDYL QKLVDKKEEQ ITKLQKMNEM EESFNDPWFI  120
QSIATLGDGS GIESTPKEGN GVNVEYDGHS KDLD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252141.19e-88MADS-box transcription factor PHERES 2-like
TrEMBLK4DD641e-109K4DD64_SOLLC; Uncharacterized protein
STRINGSolyc12g017300.1.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-14AGAMOUS-like 96