PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g019820.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 76aa    MW: 8701.02 Da    PI: 8.785
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g019820.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-113164237
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                        + +T eE++++++a++++G+  W+ Ia+ ++ gRt 
  Sopim12g019820.0.1 31 QYFTLEEEDIILKAHAKFGNQ-WAMIASLLP-GRTN 64
                        579****************99.*********.**95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.773128IPR017930Myb domain
CDDcd001670.00439324No hitNo description
SuperFamilySSF466897.89E-21468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-12438IPR009057Homeodomain-like
PROSITE profilePS512947.7253071IPR017930Myb domain
PfamPF002498.2E-93163IPR001005SANT/Myb domain
CDDcd001675.94E-73363No hitNo description
Gene3DG3DSA:1.10.10.601.9E-123968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MGHINQLIPS RTAKSCKERW CNHLNPQLDH QYFTLEEEDI ILKAHAKFGN QWAMIASLLP  60
GRTNGFIKKS LEFHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-184683094MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-184683094C-Myb DNA-Binding Domain
1msf_C5e-184683094C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-117HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060233.17e-30transcription factor MYB44-like
SwissprotO231606e-21MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3Q7J6M51e-46A0A3Q7J6M5_SOLLC; Uncharacterized protein
STRINGSolyc12g019820.1.19e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3024922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.13e-24myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]