PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g056750.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 189aa    MW: 22455 Da    PI: 8.9232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g056750.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826.2e-26105164159
                         ---SS-EEEEEEE--TT-.SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgs.efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYG+K+vk++ ++ r+YY+C+ +gC+ kk+ver+ +d +++++tYeg+Hnhe
  Sopim12g056750.0.1 105 LDDGYKWRKYGKKKVKSNqKYLRNYYKCSIRGCMIKKRVERDGHDSSYLITTYEGKHNHE 164
                         59**************873689*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-2792165IPR003657WRKY domain
SuperFamilySSF1182902.88E-2398165IPR003657WRKY domain
PROSITE profilePS5081124.696100166IPR003657WRKY domain
SMARTSM007742.9E-28105165IPR003657WRKY domain
PfamPF031061.3E-20106164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMTQDFSYNN NFQDFEFSSF LDQLFVDYSP TNNNNFNTCI LENDNSHLMT QDYSYNGISS  60
NSYYATPPNM NHLKEKSKEG IIKKEIKNNE RHVIVLRTKT QLEILDDGYK WRKYGKKKVK  120
SNQKYLRNYY KCSIRGCMIK KRVERDGHDS SYLITTYEGK HNHESYSSII YNHTEVNSEF  180
ELNFHRGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-2494164372WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-121HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252561.21e-137probable WRKY transcription factor 51
TrEMBLA0A3Q7JC601e-136A0A3Q7JC60_SOLLC; Uncharacterized protein
STRINGSolyc12g056750.1.11e-137(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-22WRKY DNA-binding protein 51