PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g100150.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 169aa    MW: 18630 Da    PI: 7.5377
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g100150.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601376.8e-43141131100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C++dCv++pyfp+++p+kfa vhk+FGasnv k++++l+e +r da+ss+vyeA+ar++dP+yG+vg+i++l++q+e l+
  Sopim12g100150.0.1  14 PCAACKLLRRRCTQDCVFSPYFPSDEPHKFASVHKVFGASNVNKMIQELQEYQRGDAVSSMVYEANARIKDPIYGCVGTISSLHHQIEFLH 104
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++la +++e
  Sopim12g100150.0.1 105 TQLAIAQAE 113
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.39813114IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-4214111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKESGGRKQG ATSPCAACKL LRRRCTQDCV FSPYFPSDEP HKFASVHKVF GASNVNKMIQ  60
ELQEYQRGDA VSSMVYEANA RIKDPIYGCV GTISSLHHQI EFLHTQLAIA QAELVHMKMQ  120
QFSSMSGGGG TAANSPKNVW SPSSQHLQSE VYSEFEIYDS VQQPQINI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-45101257122LOB family transfactor Ramosa2.1
5ly0_B1e-45101257122LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127920.0AC212792.2 Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252871.11e-125LOB domain-containing protein 4
SwissprotQ9SHE96e-61LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A3Q7JE491e-123A0A3Q7JE49_SOLLC; Uncharacterized protein
STRINGSolyc12g100150.1.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-62LOB domain-containing protein 4