PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_001060_cxwk.t1
Common NameSOVF_001060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 297aa    MW: 34208.3 Da    PI: 8.6272
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_001060_cxwk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68.3e-1230121199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffk ++ s  ++s+ l++p kf++++   ke s+t +l+ +sg++ +v +   k +++ ++++GW+eFv+   ++    ++F ++g+s+f  
  Sp_001060_cxwk.t1  30 FFKLFL-SPISQSNKLRIPDKFTRKFR--KELSITSILKVPSGETQKVSI--VKEDNKLWFQNGWQEFVEYFSIDYAFLLLFNYEGNSNF-- 114
                        666664.45555666**********98..5699*****************..**********************************9999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                         v++f+ 
  Sp_001060_cxwk.t1 115 SVHIFDP 121
                        9999985 PP
2B349.67.4e-162022851498
                        T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          l ++ +fa++h +  + +sk ++le   g++++vk+  r++ +r+++++GW  F+++ gL +gD++vF+l++ ++  l+v+v +
  Sp_001060_cxwk.t1 202 LHLNISLPFARDHiKCMEMGSKLIKLEVYGGKQFTVKC--RRSYRRCTFGTGWIIFAREVGLAVGDVCVFELIDAKNYVLYVHVAK 285
                        3489999******955566899****************..*********************************9888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-1726124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-1028120No hitNo description
Gene3DG3DSA:2.40.330.101.7E-1829124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.05229122IPR003340B3 DNA binding domain
SMARTSM010191.6E-930122IPR003340B3 DNA binding domain
PfamPF023621.0E-930120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-15184286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16184286IPR015300DNA-binding pseudobarrel domain
CDDcd100176.03E-14187283No hitNo description
SMARTSM010193.9E-8189287IPR003340B3 DNA binding domain
PROSITE profilePS5086310.193189287IPR003340B3 DNA binding domain
PfamPF023621.4E-13197285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNQIKQQLQQ QQQQNIIHAN SGERKPCFSF FKLFLSPISQ SNKLRIPDKF TRKFRKELSI  60
TSILKVPSGE TQKVSIVKED NKLWFQNGWQ EFVEYFSIDY AFLLLFNYEG NSNFSVHIFD  120
PTACEISYPL NLRNSDSEVI QLDSDDEDID DASEVNPFGC QKTYWIGKYA EMVNVVAAAG  180
ISLPERPSFV TEIKPYALFR GLHLNISLPF ARDHIKCMEM GSKLIKLEVY GGKQFTVKCR  240
RSYRRCTFGT GWIIFAREVG LAVGDVCVFE LIDAKNYVLY VHVAKKDHKS RLPLNKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837493.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0K9S4430.0A0A0K9S443_SPIOL; Uncharacterized protein
STRINGXP_010679360.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-30B3 family protein