PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_001950_idwu.t1
Common NameSOVF_001950
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WOX
Protein Properties Length: 328aa    MW: 36676 Da    PI: 7.3164
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_001950_idwu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.4e-183394257
                       T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++R+t+t+eq++ L+el++    r p+a++++ + ++l    +++ ++V++WFqN++a+e++
  Sp_001950_idwu.t1 33 STRWTPTTEQIKLLKELYYIngVRSPTADQIQSICARLrrygKIEGKNVFYWFQNHKARERQ 94
                       58****************95459*************************************97 PP
2Wus_type_Homeobox1116.7e-363296265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt+eQik+L+ely+ +G+r+P++++iq i a+L++yGkie+kNVfyWFQN+kaRerqk+
  Sp_001950_idwu.t1 32 SSTRWTPTTEQIKLLKELYYiNGVRSPTADQIQSICARLRRYGKIEGKNVFYWFQNHKARERQKK 96
                       789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-61794IPR009057Homeodomain-like
SuperFamilySSF466897.27E-111896IPR009057Homeodomain-like
PROSITE profilePS500719.8472995IPR001356Homeobox domain
SMARTSM003897.0E-43199IPR001356Homeobox domain
CDDcd000862.46E-53496No hitNo description
PfamPF000464.3E-153494IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDSQEEMNMM NLNGGKMGSN NTTNSNYLCR QSSTRWTPTT EQIKLLKELY YINGVRSPTA  60
DQIQSICARL RRYGKIEGKN VFYWFQNHKA RERQKKRLTP TSPTAAAAAA ATTTTTTTTT  120
TTTTTNNNIN IIPTTQFHNN GTRNHPIQNG GLTWKQDHQD VTLQAKYHST MNNPGVSSVG  180
NGGGQLMGSF GVTMENKFSD CSISGGRGNQ WTAVGANYSQ YTPASYSNFL GKISSIGEDP  240
YNYNYNYDQD HYGTEETPQI ETLPLFPMHN EEQHNNHDHD QGFYTINRPS DGYYTAGYRC  300
SNASGDNTSL ELSLNSYGYA YGYYSPNL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2849067e-72KT284906.1 Beta palonga isolate EMBOSS_001 transcription factor WUSCHEL (wus) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861542.10.0protein WUSCHEL-like
TrEMBLA0A0K9S4960.0A0A0K9S496_SPIOL; Uncharacterized protein
STRINGXP_010680087.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-39WOX family protein