PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_002530_gmhu.t1

Common Name

SOVF_002530

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

LSD

Protein Properties

Length: 146aa MW: 15187.8 Da PI: 7.9177

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_002530_gmhu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45	1.7e-14	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C+ V Sp_002530_gmhu.t1 28 CSGCRNLLMYPAGATSVCCAVCNSV 52 ***********************98 PP
2	zf-LSD1	44.4	2.8e-14	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL+Y rGA+sV+C++C+tV Sp_002530_gmhu.t1 67 CAGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP
3	zf-LSD1	41.9	1.7e-13	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Sp_002530_gmhu.t1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	3.9E-4	24	126	No hit	No description
TIGRFAMs	TIGR01053	1.8E-13	25	55	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.8E-12	28	52	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	6.0E-5	28	126	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	4.7E-14	64	93	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.7E-12	67	91	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.7E-12	102	131	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-12	105	129	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MPVPLAPYPT PPVPFTPPAN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN SVTAVPPPGT 60 EMAQLVCAGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT SIGAAASVPE QKFSNS

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021852692.1	1e-101	protein LSD1
Refseq	XP_021852700.1	1e-101	protein LSD1
Swissprot	Q93ZB1	2e-79	LOL1_ARATH; Protein LOL1
TrEMBL	A0A0K9S2A4	1e-100	A0A0K9S2A4_SPIOL; Uncharacterized protein
STRING	VIT_02s0012g00990.t01	6e-90	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-79	lsd one like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]