PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_002790_ktjc.t1
Common NameSOVF_002790
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 400aa    MW: 44290.3 Da    PI: 9.3257
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_002790_ktjc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.97.1e-2046136186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                        +Wt +e+  Li+a+r+++ +lrrg+l++++W++v++++     +    ++++qC++k+e+l+kry+++ +++k+  + +  s+++yf++++
  Sp_002790_ktjc.t1  46 CWTPDETAGLIDAYRDKWYSLRRGNLRAAHWQDVADNVhrfcPHVSPPKTAVQCRHKMEKLRKRYRAELNRAKSIpHHKFASSWVYFSKMD 136
                        7***********************************997766677778899**********************997789999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510299.06135143IPR006578MADF domain
PfamPF138374.4E-2045137No hitNo description
SMARTSM005951.4E-1354143IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MASSSSPPPY QQQSFSDYPE PPMGIPLLLP APAQPAHTSR RLPPPCWTPD ETAGLIDAYR  60
DKWYSLRRGN LRAAHWQDVA DNVHRFCPHV SPPKTAVQCR HKMEKLRKRY RAELNRAKSI  120
PHHKFASSWV YFSKMDFMEK GDSALPAGGR GGGGGGGGAG GRVGGGGKAA SSISPVVVAD  180
EFMNDGFGDD DDDDNNNDNN DLDDDDEDYN GGSFRKEAKE FQRNGLRIRI AGNSRKNYGG  240
FDEIPNPKFG LKSSTSSRYN EFGSPPPQFD DGVRYSTRFA RNGSNGGVGS SSGMGKGKGV  300
NMNMNMNMNT MKKKRSALNR DGGRKERGDN VAMAMVEAIR VLGEGYVRTE MTKIEMMREA  360
EKSRMETELK RTQMVLEYHQ NIVETFVRGW SNHKNNDSDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159166GGRVGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850858.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A0K9S3N90.0A0A0K9S3N9_SPIOL; Uncharacterized protein
STRINGXP_010690969.15e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-44Trihelix family protein