PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_003140_hfzs.t1
Common NameSOVF_003140
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRF
Protein Properties Length: 501aa    MW: 56069.1 Da    PI: 8.8984
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_003140_hfzs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.43e-24152196145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRC + v++++k+CE+H+hrgr+rsrk +e+
  Sp_003140_hfzs.t1 152 DPEPGRCRRTDGKKWRCHQSVIPNQKYCEKHMHRGRKRSRKLVEA 196
                        79****************************************997 PP
2WRC50.92.8e-16379418342
                WRC   3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                        ++ rC+RtDGK+WRC+++v++  k+CE H +rgr r +k+
  Sp_003140_hfzs.t1 379 SDSRCKRTDGKRWRCKKQVVPHRKYCEQHDNRGRFRPKKQ 418
                        578********************************99997 PP
3QLQ447e-1692125336
                QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                        FT +Q ++Lk+Q+l++Ky++ ++PvP +Ll++i+
  Sp_003140_hfzs.t1  92 FTEEQGEELKRQLLIFKYMVWGLPVPFQLLLPIW 125
                        9********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.6E-790126IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.88791126IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-1092125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.834152196IPR014977WRC domain
PfamPF088791.1E-20153195IPR014977WRC domain
PROSITE profilePS5166718.044377422IPR014977WRC domain
PfamPF088793.9E-13380418IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MKPQITLFST CSGSDQKSNV GVEDRWRKKT EEQGIKTEEE ESQPLISLGL GIGGSNIKCR  60
EKDRIVMVKK EEDDDDQAVE SKRCSKYSVV RFTEEQGEEL KRQLLIFKYM VWGLPVPFQL  120
LLPIWTSLKP SSFPPLLLAI FRGGSEHREM SDPEPGRCRR TDGKKWRCHQ SVIPNQKYCE  180
KHMHRGRKRS RKLVEASPYS RTPNLINSNA IRAIKPKFPE NVCLKGPTNF VVEAPCLTSY  240
PAKSNNNPSN GKFPENLHQN RPTGVVMRAP GLNNFTAKSN EKDKRNNSSS NDTSPEFAEN  300
LYQNGPTMVM MRTPGLTTCT TKSNENNKPN NEAKSDNVAN ERIALLNRAS GLDFSPKSVL  360
QSGMGTICPR VESCENSESD SRCKRTDGKR WRCKKQVVPH RKYCEQHDNR GRFRPKKQSL  420
GSVASREAEG ANGSTFSAET EQEKIGLGLD TNLKISLPTS LDDPRSIIND SVSQNCASSS  480
SSEATETDEN TDVSDIIVVS C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185192GRKRSRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858967.10.0growth-regulating factor 9-like
TrEMBLA0A0K9S3W90.0A0A0K9S3W9_SPIOL; Uncharacterized protein
STRINGXP_010692311.18e-70(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.11e-33growth-regulating factor 9