PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_003600_oqtx.t1
Common NameSOVF_003600
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Whirly
Protein Properties Length: 702aa    MW: 79543.5 Da    PI: 9.2611
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_003600_oqtx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly126.31.7e-3957866453139
             Whirly  53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        ++f+ls+te+++lv+l++++sceffhdp +++s+eGkvrk+lkvePlpdG+G+f+nlsv+n+l++ +e++++P+skaefav+ s+++
  Sp_003600_oqtx.t1 578 NVFSLSVTEIGSLVSLGARDSCEFFHDPNKGKSDEGKVRKVLKVEPLPDGTGYFFNLSVQNKLLNLDENVYIPISKAEFAVIVSAFN 664
                        68********************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.101.3E-6275311IPR001878Zinc finger, CCHC-type
SuperFamilySSF577563.14E-7275321IPR001878Zinc finger, CCHC-type
SMARTSM003430.036277293IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.455278293IPR001878Zinc finger, CCHC-type
SMARTSM003430.55303319IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.108.5E-5312340IPR001878Zinc finger, CCHC-type
SMARTSM003430.37334350IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.3E-4341396IPR001878Zinc finger, CCHC-type
SMARTSM003430.28381397IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.532382395IPR001878Zinc finger, CCHC-type
SMARTSM003432429445IPR001878Zinc finger, CCHC-type
SMARTSM003432.7471487IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.8E-4511573IPR001878Zinc finger, CCHC-type
SMARTSM003430.74513529IPR001878Zinc finger, CCHC-type
SMARTSM003434.2556572IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:2.30.31.103.4E-45578687IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.6E-33578661IPR013742Plant transcription factor
SuperFamilySSF544475.26E-46579701IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MWSICSTLQL ILVIPPWRHN TKLLFHHSKS TKFNYFPQHC HIIKCNFSRD DSPSPIPNQN  60
QLGYDPSEEL YGLDVDMPPR GKSDALETRS WFGPNGQYIK ELPCPSCRGR GYTPCAECGI  120
ERSRQDCSLC SGKGLMTCEQ CLGERVIWEE LIDEIPWEKA RSISLLKVKE DDDVDNLELN  180
LDSRKKSKRV YRSTPPEVGL KISRSLKSLN AKTGLFSNRM KIIHRDPALH AQRVAAIKKA  240
KGKPEARKHT SDTLKIFFSD PENRRKRSLS MKGVRFFCKN CGKEGHRSYY CPEHRENTER  300
KFKCGLCGEK GHNRRTCQKP KTSKPKQRIL MEYHCRLCGK VGHNRRTCSL KTELQQSDSA  360
THENEGSLKV STVYAQKHQH QCSVCGKSGH NRRTCSLKTE LQQSDSAIHE NEGSLRVSTV  420
YAQKHHHHRC SICGKSGHNC RTCSLKTESA TFENKGTLIL KDDLKGNVHH RCSVCGKSGH  480
NCRTCSLKTE SATFANKGTL ILKDDLKGNV HHRCSVCRKS GHNKRTCSAH SIEEFDSVEE  540
LDMISGVSQK TRREYHCKIC GVLGHNRRTC ADRGVVNNVF SLSVTEIGSL VSLGARDSCE  600
FFHDPNKGKS DEGKVRKVLK VEPLPDGTGY FFNLSVQNKL LNLDENVYIP ISKAEFAVIV  660
SAFNFVLPYL LGWHVFADSI KPENSNRANN SNTKTVDYEW NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A7e-6557970196219p24: plant transcriptional regulator PBF-2
1l3a_B7e-6557970196219p24: plant transcriptional regulator PBF-2
1l3a_C7e-6557970196219p24: plant transcriptional regulator PBF-2
1l3a_D7e-6557970196219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844623.10.0uncharacterized protein LOC110784476 isoform X1
TrEMBLA0A0K9S1D90.0A0A0K9S1D9_SPIOL; Uncharacterized protein
STRINGXP_010696423.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-65ssDNA-binding transcriptional regulator