PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_004170_asdt.t1

Common Name

SOVF_004170

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

WRKY

Protein Properties

Length: 449aa MW: 49218.9 Da PI: 6.1108

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_004170_asdt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.6e-31	241	299	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY+++Hnh+ Sp_004170_asdt.t1 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSDHNHP 299 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.925	235	301	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.9E-31	235	301	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	238	301	IPR003657	WRKY domain
SMART	SM00774	9.4E-38	240	300	IPR003657	WRKY domain
Pfam	PF03106	9.2E-26	242	299	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MDNNNNNNYQ GDLADIVRAS GGTTETTTTK VTTTNIGGQI PKWSFGSSNN DQYHQLKDDV 60 YSLIPTAETL LRDMDDAIAI STSSSNTFLN NFSIDHSSAT TNNNSNNNNN NNNNNNNNGV 120 CDIFPPNMVQ ISQDSNKANN IEDVKLPIQS AAGALPKNVN GAASFGFMSN QMLSNFNASC 180 SNSPKTGGFI DGANAIGGPH LQISSPRNQG IKRRKIQAKK VVCIPAPAAA NSRQTGEVVP 240 SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRTDPNMLVI TYTSDHNHPW 300 PTQRNALAGS TRSSQPVSKT SSKPSNNNFH NVLIKEENQN NVSTTTTTTT LPVVKEEEIR 360 LKNDGFESYR PLILAADPTT INNNEHEQQA DQDFFTDLVE FESDDPLELF STQGCKGFES 420 FTGLFDWATT TNQEENDHTT IPKCSKADI

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MDNNNNNNYQ GDLADIVRAS GGTTETTTTK VTTTNIGGQI PKWSFGSSNN DQYHQLKDDV  60
YSLIPTAETL LRDMDDAIAI STSSSNTFLN NFSIDHSSAT TNNNSNNNNN NNNNNNNNGV  120
CDIFPPNMVQ ISQDSNKANN IEDVKLPIQS AAGALPKNVN GAASFGFMSN QMLSNFNASC  180
SNSPKTGGFI DGANAIGGPH LQISSPRNQG IKRRKIQAKK VVCIPAPAAA NSRQTGEVVP  240
SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRTDPNMLVI TYTSDHNHPW  300
PTQRNALAGS TRSSQPVSKT SSKPSNNNFH NVLIKEENQN NVSTTTTTTT LPVVKEEEIR  360
LKNDGFESYR PLILAADPTT INNNEHEQQA DQDFFTDLVE FESDDPLELF STQGCKGFES  420
FTGLFDWATT TNQEENDHTT IPKCSKADI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-24	217	302	4	80	Disease resistance protein RRS1
5w3x_D	1e-24	217	302	4	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849390.1	0.0	probable WRKY transcription factor 14
Swissprot	O64747	8e-76	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0K9S393	0.0	A0A0K9S393_SPIOL; Uncharacterized protein
STRING	XP_010665626.1	1e-140	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	7e-77	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]