PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_005050_qxtm.t1
Common NameSOVF_005050
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 192aa    MW: 21665.6 Da    PI: 8.3861
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_005050_qxtm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000914264123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ F++   L  H  +H
  Sp_005050_qxtm.t1 42 YECKTCNRKFPSFQALGGHRASH 64
                       99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.2E-840111No hitNo description
PfamPF139121.5E-124166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0144269IPR007087Zinc finger, C2H2
SMARTSM003550.0864264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM003550.2789111IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-1089113IPR007087Zinc finger, C2H2
PROSITE profilePS501578.66389111IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGIKRNREDM ELERTLVMAN YLILLSRPPQ VSVEQLSETR VYECKTCNRK FPSFQALGGH  60
RASHKKPRLS ITGEYTRIED DNVKKPKIHE CSICGLEFPI GQALGGHMRR HRAALTRSSQ  120
QQQLLPTTTL SLSLEASSNS YDVSELSGVS KSRSTSEEHN DDHKRFICLD LNLTPLENGL  180
LQFGNFAPHV VC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861960.11e-142zinc finger protein ZAT12
TrEMBLA0A0K9S3411e-140A0A0K9S341_SPIOL; Uncharacterized protein
STRINGXP_010669838.14e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-34C2H2 family protein