PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_005290_yuzh.t1

Common Name

SOVF_005290

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GeBP

Protein Properties

Length: 478aa MW: 51352.5 Da PI: 4.6466

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_005290_yuzh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.7	3.1e-37	116	214	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 lfqrlw++eDei lLqG++d+++ +g+ ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke++f+++hdq +fe Sp_005290_yuzh.t1 116 LFQRLWTDEDEIELLQGFLDYTSGRGTtssGHHHDTAAFYDQIKSKLQLEFNKNQLVEKLRRLKKKYRNVISKISSGKEFTFKSPHDQATFE 207 79**********************97644566****************************************************** PP DUF573 91 lskkiWg 97 +s+kiW Sp_005290_yuzh.t1 208 ISRKIWS 214 ****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.6E-35	117	214	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MASEEDQPIY NDDDFDDDDD DSEPLNGGVP DDDVAVDSDS SSGEDSTIAG DSTAVTVAIP 60 SSSTAISVAV PPPAPNSSSA VTIALPDPKR HRIDPLSSSS PIVNPEKKPI DDSRRLFQRL 120 WTDEDEIELL QGFLDYTSGR GTTSSGHHHD TAAFYDQIKS KLQLEFNKNQ LVEKLRRLKK 180 KYRNVISKIS SGKEFTFKSP HDQATFEISR KIWSNISPSF RGVAEFDDDD QNPNPNPNLT 240 PGSNFASATP PRPPNSSFVV SHINLNNSAT GMASTPMLLD QKAGSSGSYN HNNNNSNNNN 300 AVGYDIMMSN LNSPAAKLSS RKRPRVGKVD EKFGRNVNLG GMVGGEGGNV IDNSNINNNN 360 SNITSSSNIN LGSTMQGLIE EAVRSCLSPM VKDLVSNTVN GTVFGGSVGG IKGVGALALN 420 AVPLNFSGVS SAGSSGGDVM DEKWRNQQIL ELEVYSKRLE LVQDQIKLSL EELRSMGS

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MASEEDQPIY NDDDFDDDDD DSEPLNGGVP DDDVAVDSDS SSGEDSTIAG DSTAVTVAIP  60
SSSTAISVAV PPPAPNSSSA VTIALPDPKR HRIDPLSSSS PIVNPEKKPI DDSRRLFQRL  120
WTDEDEIELL QGFLDYTSGR GTTSSGHHHD TAAFYDQIKS KLQLEFNKNQ LVEKLRRLKK  180
KYRNVISKIS SGKEFTFKSP HDQATFEISR KIWSNISPSF RGVAEFDDDD QNPNPNPNLT  240
PGSNFASATP PRPPNSSFVV SHINLNNSAT GMASTPMLLD QKAGSSGSYN HNNNNSNNNN  300
AVGYDIMMSN LNSPAAKLSS RKRPRVGKVD EKFGRNVNLG GMVGGEGGNV IDNSNINNNN  360
SNITSSSNIN LGSTMQGLIE EAVRSCLSPM VKDLVSNTVN GTVFGGSVGG IKGVGALALN  420
AVPLNFSGVS SAGSSGGDVM DEKWRNQQIL ELEVYSKRLE LVQDQIKLSL EELRSMGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021848789.1	0.0	probable transcription factor At3g04930 isoform X1
TrEMBL	A0A0K9S386	0.0	A0A0K9S386_SPIOL; Uncharacterized protein
STRING	XP_010674885.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	1e-55	DNA-binding storekeeper protein-related transcriptional regulator