PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_005840_iyxx.t1
Common NameSOVF_005840
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Dof
Protein Properties Length: 253aa    MW: 25482.2 Da    PI: 7.9976
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_005840_iyxx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.45.8e-372785462
             zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                       + l+cprC stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk  k+s
  Sp_005840_iyxx.t1 27 EPLPCPRCTSTNTKFCYYNNYNFSQPRHFCKSCRRYWTQGGTLRDIPVGGGSRKTAKRS 85
                       6789**************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-27283IPR003851Zinc finger, Dof-type
PfamPF027011.4E-322883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7512983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPTEAAEKRA VRAQQSGALL PPVEFHEPLP CPRCTSTNTK FCYYNNYNFS QPRHFCKSCR  60
RYWTQGGTLR DIPVGGGSRK TAKRSRTCSV SSSPTSTSSA LSIGPILDHN PFSQAPVYVS  120
LSSTTAGGGG GGGGGGFTSL LSGGGGGPGL LALGGFGLGL GLDEVGFGLG RGVWAFPHHE  180
IGSYMNGVNG GCGVGGDNGG GCGGGGGGGE GGGVSRSDTW HMESGEMVGY VGGEYFTSLP  240
DLAAISTSGN GLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835848.11e-180dof zinc finger protein DOF3.4
TrEMBLA0A0K9S2U71e-179A0A0K9S2U7_SPIOL; Uncharacterized protein
STRINGXP_010680466.13e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.11e-37OBF binding protein 1