PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_006130_aegy.t1

Common Name

SOVF_006130

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRAS

Protein Properties

Length: 493aa MW: 56092.9 Da PI: 7.1411

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_006130_aegy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	347.3	2.5e-106	90	493	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........... 81 ++lL++cAe +s +d a++lL+ +s+ + ++gd+++Rl+ yf +AL++rl+r +l ++ ++ ++++ + + + Sp_006130_aegy.t1 90 RQLLVTCAELISRSDYLSANRLLSLISTDfSLQSGDSTERLVYYFCKALRERLNR---HLLSTTTCVINNPNIITLLPHQRpifpspqiipr 178 689***********************9555667****************...5555555555554442222222244555666666 PP GRAS 82 .............klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgske 156 +++v+P+++f+hltaNqaIleaveg +Hi+D+di++G+QWp+Llqa+ +R+ +++p++ iTg + + + Sp_006130_aegy.t1 179 rpsrdvttryssyLSLNQVTPFIRFTHLTANQAILEAVEGYPSIHILDMDIMHGVQWPPLLQAIMERSstlgRPSPTICITGASY----DPN 266 666666665544266*************************************************8888889******....9 PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeL............rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksls 235 l +tg+rL++fAe+lg++fef lv ++ + l+ +e r+++ +Eala+n+ lh ll + sl+ ++L vk+l+ Sp_006130_aegy.t1 267 LLDRTGDRLRRFAESLGLEFEFCHLVLDNSQLLDHSEAvthalldhrlrfRFDQvEEALAINCGDYLHCLL--TRSLR----RFLYKVKTLN 352 ***********************888777776555422222344333344449***********9..44455....5***** PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 P+v+++ e+eadhn++ Fl+rf+eal++y a+fdslea+lp++s+er vE ++g+ei++vv eg++r++rh+++e+W++ l+++GFk++ Sp_006130_aegy.t1 353 PRVLTLGEREADHNHPLFLRRFVEALDHYGAVFDSLEATLPPQSQERLAVEDSWFGEEIKDVVGEEGEQRKQRHQRFESWEMVLHSSGFKSL 444 **************************************************************************************** PP GRAS 328 plsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374 pls + +qaklllr ++ s+gy+++ ++++l+lgWk+rpL+svS+W+ Sp_006130_aegy.t1 445 PLSPFSLSQAKLLLRLHYpSEGYQLQvVKRNCLLLGWKNRPLYSVSSWQ 493 **********************7889****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.355	63	471	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.7E-104	90	493	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MLGSSSYSSE EDRDHDRSWP LLDLPPLPQQ PPLRLLDYQR LLISSGGNTT SINTSITTAV 60 VTVASSSVVL SSTPPTLLST SPQSSVIHPR QLLVTCAELI SRSDYLSANR LLSLISTDFS 120 LQSGDSTERL VYYFCKALRE RLNRHLLSTT TCVINNPNII TLLPHQRPIF PSPQIIPRRP 180 SRDVTTRYSS YLSLNQVTPF IRFTHLTANQ AILEAVEGYP SIHILDMDIM HGVQWPPLLQ 240 AIMERSSTLG RPSPTICITG ASYDPNLLDR TGDRLRRFAE SLGLEFEFCH LVLDNSQLLD 300 HSEAVTHALL DHRLRFRFDQ VEEALAINCG DYLHCLLTRS LRRFLYKVKT LNPRVLTLGE 360 READHNHPLF LRRFVEALDH YGAVFDSLEA TLPPQSQERL AVEDSWFGEE IKDVVGEEGE 420 QRKQRHQRFE SWEMVLHSSG FKSLPLSPFS LSQAKLLLRL HYPSEGYQLQ VVKRNCLLLG 480 WKNRPLYSVS SWQ

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MLGSSSYSSE EDRDHDRSWP LLDLPPLPQQ PPLRLLDYQR LLISSGGNTT SINTSITTAV  60
VTVASSSVVL SSTPPTLLST SPQSSVIHPR QLLVTCAELI SRSDYLSANR LLSLISTDFS  120
LQSGDSTERL VYYFCKALRE RLNRHLLSTT TCVINNPNII TLLPHQRPIF PSPQIIPRRP  180
SRDVTTRYSS YLSLNQVTPF IRFTHLTANQ AILEAVEGYP SIHILDMDIM HGVQWPPLLQ  240
AIMERSSTLG RPSPTICITG ASYDPNLLDR TGDRLRRFAE SLGLEFEFCH LVLDNSQLLD  300
HSEAVTHALL DHRLRFRFDQ VEEALAINCG DYLHCLLTRS LRRFLYKVKT LNPRVLTLGE  360
READHNHPLF LRRFVEALDH YGAVFDSLEA TLPPQSQERL AVEDSWFGEE IKDVVGEEGE  420
QRKQRHQRFE SWEMVLHSSG FKSLPLSPFS LSQAKLLLRL HYPSEGYQLQ VVKRNCLLLG  480
WKNRPLYSVS SWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-56	96	492	26	378	Protein SCARECROW
5b3h_A	6e-56	96	492	25	377	Protein SCARECROW
5b3h_D	6e-56	96	492	25	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857666.1	0.0	scarecrow-like protein 18
TrEMBL	A0A0K9S2J7	0.0	A0A0K9S2J7_SPIOL; Uncharacterized protein
STRING	XP_010690197.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-103	GRAS family protein