PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_007350_fcmi.t1
Common NameSOVF_007350
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 641aa    MW: 71137.5 Da    PI: 6.9882
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_007350_fcmi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07542591147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sp_007350_fcmi.t1 542 RRPFSVTEVESLVQAVEKLGTGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 591
                        6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.21E-7351436IPR029071Ubiquitin-related domain
PROSITE profilePS500538.524356427IPR000626Ubiquitin domain
PROSITE profilePS5129415.236537596IPR017930Myb domain
SMARTSM007173.9E-6541594IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-10542592IPR009057Homeodomain-like
SuperFamilySSF466892.45E-15543624IPR009057Homeodomain-like
CDDcd116602.25E-16543593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MLQKRLLDYG FSGYQVPFIP RAARSARKRG LIREKAADNL SAFDLLATVA GKLLEGESSQ  60
HTPDEKDQLG NAQDVVMQEQ DEGNLCVKDE HCDKGINLEI GLQVEDHDCI VKEISGPRND  120
ASPAPASVIT SSHCLEKDDF LVKMDVNDDK SDFCSHSRNT EGYAPGHTDS SIRNGNESPE  180
EHDGKGEILS GNGLDMHCSE DPEFFDGDSP AVASSDCSIK LSLGVDHYPC RDNNNVKVVT  240
RDDDENSSEC TQPSTMKAAR LPARIGDRRI RKLLASKYWR VKDGDHSDTG LRCIYRSRRT  300
GYKRQRSQRI YPFKKRKFYH YSSLSNSDGD TGCKANGSSS CVAGQSTSFA SRESHVKLRI  360
KSFRVPELII EMPETATIGD LKRSVLETLT ALIEGGLRVG VRHQGKKIRD DNRTLVQSGI  420
CHDDNVESLG FILEPNPSHI STPVSSDNSL MLSTDVPQPV SRCPITSANN DGAYHDHMVT  480
NLGNLVESDH DSAPSPAETT AEKGAVDFRA LVALPEGTPQ ALAVVQSHQK SKRSEMAQRR  540
IRRPFSVTEV ESLVQAVEKL GTGRWRDVKL RAFDNVKHRT YVDLKDKWKT LVHTARISPQ  600
QRRGEPVPQD LLDRVLAAHS YWSQQQAKQQ LKQPSDACLL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-575296324107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266272DRRIRKL
2307316QRIYPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863650.10.0telomere repeat-binding protein 5-like
TrEMBLA0A0K9S2D70.0A0A0K9S2D7_SPIOL; Uncharacterized protein
STRINGXP_010685737.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-131TRF-like 2