PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_007860_sigc.t1
Common NameSOVF_007860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 351aa    MW: 37420 Da    PI: 5.6674
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_007860_sigc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.42.7e-22234296163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+e+kre+rkq+NRe+ArrsR+RK+ae+eeL +kv++L  eN+aL++e+++l + ++kl+se+
  Sp_007860_sigc.t1 234 EREVKREKRKQSNRESARRSRLRKQAEMEELGKKVDSLNVENMALRSEINKLVEDSEKLRSEN 296
                        799**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.5E-26187IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.8E-15231294No hitNo description
SMARTSM003381.8E-19234298IPR004827Basic-leucine zipper domain
PfamPF001701.3E-20234296IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.978236299IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11237293No hitNo description
CDDcd147026.52E-21239287No hitNo description
PROSITE patternPS000360241256IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGNSEGEKPA NTEKAASPPR EQSGVHVYPD WATVQAYYGS GALPPPYYNP AAASGHAVQP  60
YMWPPPQMMA PYGTPYAMYP HGGMYGPSAA PVCMQVPAPL SLETPAKSSG KDSGSGKTAK  120
ESDVHAALGN GNANAESAGD GGARGQSQST DCGTEGSCER SYDSSAREDN SSRSCNGVMD  180
TGTCNMQMNG VVPGIPMASV NPVGNSPMPT PDMNHRPGAG TNANGVRGAP RQDEREVKRE  240
KRKQSNRESA RRSRLRKQAE MEELGKKVDS LNVENMALRS EINKLVEDSE KLRSENAALM  300
GKLGNIQGQG DETGTENRTE NQETSHINTE NLLSRVNNSV SDGVHEQHEE K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256RRSRLRK
2250257RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840076.10.0common plant regulatory factor 1-like isoform X1
TrEMBLA0A0K9S2E70.0A0A0K9S2E7_SPIOL; Uncharacterized protein
STRINGXP_010671541.11e-178(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-52G-box binding factor 3