PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_007860_sigc.t2
Common NameSOVF_007860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 348aa    MW: 37057.6 Da    PI: 5.6677
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_007860_sigc.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.42.7e-22231293163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+e+kre+rkq+NRe+ArrsR+RK+ae+eeL +kv++L  eN+aL++e+++l + ++kl+se+
  Sp_007860_sigc.t2 231 EREVKREKRKQSNRESARRSRLRKQAEMEELGKKVDSLNVENMALRSEINKLVEDSEKLRSEN 293
                        799**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.4E-26187IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.7E-15228291No hitNo description
SMARTSM003381.8E-19231295IPR004827Basic-leucine zipper domain
PfamPF001701.3E-20231293IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.978233296IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11234290No hitNo description
CDDcd147025.72E-21236284No hitNo description
PROSITE patternPS000360238253IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGNSEGEKPA NTEKAASPPR EQSGVHVYPD WATVQAYYGS GALPPPYYNP AAASGHAVQP  60
YMWPPPQMMA PYGTPYAMYP HGGMYGPSAA PVVPAPLSLE TPAKSSGKDS GSGKTAKESD  120
VHAALGNGNA NAESAGDGGA RGQSQSTDCG TEGSCERSYD SSAREDNSSR SCNGVMDTGT  180
CNMQMNGVVP GIPMASVNPV GNSPMPTPDM NHRPGAGTNA NGVRGAPRQD EREVKREKRK  240
QSNRESARRS RLRKQAEMEE LGKKVDSLNV ENMALRSEIN KLVEDSEKLR SENAALMGKL  300
GNIQGQGDET GTENRTENQE TSHINTENLL SRVNNSVSDG VHEQHEEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247253RRSRLRK
2247254RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840083.10.0common plant regulatory factor 1-like isoform X2
TrEMBLA0A0K9S0Q40.0A0A0K9S0Q4_SPIOL; Uncharacterized protein
STRINGXP_010671541.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.17e-50G-box binding factor 3