PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_008010_meew.t1
Common NameSOVF_008010
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 307aa    MW: 35879.9 Da    PI: 10.5431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_008010_meew.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.1e-2024113198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffkv +p++++k  +lv+p +f+++++gk   +++++l++++g++W+v+l  +k  ++ +++kGW++Fv  n L  g+f++F+++g+s f  
  Sp_008010_meew.t1  24 FFKVYLPEHNSK--QLVIPPDFIKNFMGK--IPMEVILKNLKGEVWNVEL--EKAECKLLIKKGWEDFVIGNSLARGEFLIFTYKGNSMF-- 107
                        889996666665..59*******988888..899****************..**********************************9999.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +vk+f+
  Sp_008010_meew.t1 108 TVKIFS 113
                        999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-2317117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2321117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.4822115IPR003340B3 DNA binding domain
CDDcd100171.45E-1822113No hitNo description
SMARTSM010194.3E-1924115IPR003340B3 DNA binding domain
PfamPF023621.4E-1824113IPR003340B3 DNA binding domain
PROSITE profilePS508638.557186287IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-9190270IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.011190282IPR003340B3 DNA binding domain
PfamPF023621.4E-7191271IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-9196271IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MARPVKRRRG RPFKYSASQL PPEFFKVYLP EHNSKQLVIP PDFIKNFMGK IPMEVILKNL  60
KGEVWNVELE KAECKLLIKK GWEDFVIGNS LARGEFLIFT YKGNSMFTVK IFSINGCVKD  120
DEPVVTNEQP HVKVKQEPNS DQIYSHETGA CEKTHLERSS TNNERLSQDL HEAVTKDVPE  180
RTVESNKIRF TRVHKGKMYE LHIPSSIFRK YKIERPEIKR PEMVLLKYRR GISQTVKILG  240
GRDRVLITSG WKEFKLKNKL VKGDEYEFEI SVGEGRKIKE IELLKILPRK TVTTRKRKKI  300
TLRPRNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127RPVKRR
2294298RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838094.10.0putative B3 domain-containing protein Os03g0621600
RefseqXP_021847162.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0K9S0M50.0A0A0K9S0M5_SPIOL; Uncharacterized protein
STRINGXP_010674817.15e-63(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-22B3 family protein