PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_008030_ekix.t1
Common NameSOVF_008030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 141aa    MW: 16498.4 Da    PI: 7.2382
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_008030_ekix.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.86.2e-152383363
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                       +++r+rr+++NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ ++  ++  +e+
  Sp_008030_ekix.t1 23 DDRRQRRMISNRESARRSRMRKQRHLDELWSQVIRLRNENNNLIEKLNHVSESHETILQEN 83
                       589***********************************************99998887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.4E-152185IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0592386IPR004827Basic-leucine zipper domain
PfamPF001708.7E-132483IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-112596No hitNo description
SuperFamilySSF579597.03E-132575No hitNo description
CDDcd147022.05E-142676No hitNo description
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MSSNSTSDES EEMHHQQGKM MIDDRRQRRM ISNRESARRS RMRKQRHLDE LWSQVIRLRN  60
ENNNLIEKLN HVSESHETIL QENVRLKQEA SDLRQLINGM QLATTFNGLR DLEDIPCTTA  120
HLRAESNSTH SITTSSTDLL M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13744RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00262DAPTransfer from AT2G04038Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857715.17e-98basic leucine zipper 43-like
SwissprotQ9FMC22e-36BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0K9S0G62e-96A0A0K9S0G6_SPIOL; Uncharacterized protein
STRINGXP_010681295.14e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-34basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]