PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_008550_pprc.t1
Common NameSOVF_008550
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 293aa    MW: 33151.8 Da    PI: 6.8237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_008550_pprc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05120139120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C k+F+r  n++ H+
  Sp_008550_pprc.t1 120 FSCPVCYKTFNRYNNMQMHM 139
                        89*****************9 PP
2zf-C2H212.80.00037204226123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +C+k F  + + ++H +++
  Sp_008550_pprc.t1 204 FMCRKCSKAFAVRGDWRTHEKNC 226
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.01E-5115142No hitNo description
Gene3DG3DSA:3.30.160.604.8E-6120139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743120147IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SMARTSM00355310166199IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.22E-6186224No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5191224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573204224IPR015880Zinc finger, C2H2-like
SMARTSM00355150230253IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDIVDENINS RNSAKPGRRS KSSSLEEEEE EEDEETVTVA LHIGLPNPSA ADLASILSPP  60
STINNNNNNS ILRDGDGDSK NNNENDEETE DFGHPLMNRL NKGQYWIPTP TQILIGPTQF  120
SCPVCYKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA PGCKNNIDHP  180
RAKPLKDFRT LQTHYKRKHG IKPFMCRKCS KAFAVRGDWR THEKNCGKLW YCICGSDFKH  240
KRSLKDHIKA FGHGHASYGV NGFEEEDEAA SEVEHDNEDN QPVKEQSPAT SLN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847265.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-135ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0K9S2630.0A0A0K9S263_SPIOL; Uncharacterized protein
STRINGXP_010672755.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]