PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_008850_himt.t1
Common NameSOVF_008850
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 302aa    MW: 31803.7 Da    PI: 9.9945
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_008850_himt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.8e-07105129226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        kt+ C+ f     CkyGd+C+F+Hg
  Sp_008850_himt.t1 105 KTKMCNKFNSPEGCKYGDKCHFSHG 129
                        7889999999999***********9 PP
2zf-CCCH34.82.8e-11269293126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +f + G C +GdrC+FaHg
  Sp_008850_himt.t1 269 FKTRLCENFTK-GSCTFGDRCHFAHG 293
                        79*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.683764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3433765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-63864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-73963IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
PROSITE profilePS5010313.77103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.36103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-7104133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-11104133IPR000571Zinc finger, CCCH-type
PfamPF146080.12109129No hitNo description
SuperFamilySSF547911.75E-15168246IPR004088K Homology domain, type 1
SMARTSM003223.2E-11173243IPR004087K Homology domain
PROSITE profilePS5008414.445174238IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.9E-17174246IPR004088K Homology domain, type 1
CDDcd001053.89E-14176239No hitNo description
PfamPF000136.2E-10177240IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.7E-15267299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8268298IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.568268295IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9269293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDFGGPRKRG RHDAAVNGNG GFKKSRPESE SFQTGVGSKS KPCTKFFSTS GCPFGEGCHF  60
LHHVPGGFKA VSQMMNHGGA PVPPPSRNLA GPPSFSDGPA GQAGKTKMCN KFNSPEGCKY  120
GDKCHFSHGD RQLGRPSIPS YEDPRGMGYM GGRMGGRMEP PPPGLGAGTN FGDSISAKVS  180
IDASLAGAVI GKSGTNSKQI CRVTGVKLAI RDHETDSNKR NIELEGTFDQ IKQASSMVQE  240
LIRNVKAASG PPARQNNTGH GAPGGGSNFK TRLCENFTKG SCTFGDRCHF AHGADEMRKS  300
AI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863326.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9S1U10.0A0A0K9S1U1_SPIOL; Uncharacterized protein
STRINGXP_010673537.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-53C3H family protein