PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_008890_jqtc.t1
Common NameSOVF_008890
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 780aa    MW: 85566.4 Da    PI: 8.7695
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_008890_jqtc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-081849335
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgR 35
                       +W t E++llv+av+++G ++W++Ia++++ +R
  Sp_008890_jqtc.t1 18 AWGTLEELLLVCAVNRHGINSWDSIAEELQ-KR 49
                       7****************************9.66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.54E-51551IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-41850IPR009057Homeodomain-like
CDDcd001671.95E-41849No hitNo description
PfamPF002499.6E-71851IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-491104IPR009057Homeodomain-like
Gene3DG3DSA:1.20.920.107.0E-17336463IPR001487Bromodomain
SMARTSM002972.5E-18339448IPR001487Bromodomain
SuperFamilySSF473704.06E-20341457IPR001487Bromodomain
CDDcd043691.23E-15350443No hitNo description
PfamPF004395.6E-10353433IPR001487Bromodomain
PROSITE profilePS5001412.347358429IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MEEEKEEETT SSNNGDEAWG TLEELLLVCA VNRHGINSWD SIAEELQKRI KHSSNNNNNN  60
RNDDDEEEND DDGGGGGGEG EGTVISSCFS SGNCRKKYVH LKRRFHNDER ESVEEEEVVE  120
AAAAEEEDGG EEHLLRMVDE LRKLRVEELK REVHRHDVSI VSLQLKVKRL EEERESSCKV  180
KAEEVEEDDD GEEEERVVLL SDLRIKPEEN GNGTGEKEDE PERSSFDKVV VTGDSAENRS  240
CNESNSTNHN KTDNTKAATT EERESKLKRE PPEKKRSDSA AAEWKVSRLG ELGGESLSES  300
RRQQSSDVQS SASLSKKKRR RFKGDSGDDE LEVEEVSPAN KRINAKSQPL IRFFESLRSH  360
KHGSVFQRRL PSQDTEKYRN VIRQHMDLDT VQSRLDKGIY FDCHPKFYRD LLLIFTNAVL  420
FYRKSTAEHI AARELRRLVM DEINQKTRNP RVQPRKPDPE PQHLEPVVKK PRSSTTMIVC  480
RRRSSSSMQA LSDSMKKADT TSTINSNSKK INNSNNNSNV ENGREEKVTK KVNGGSLSSK  540
KEEGGGGGGG GGGGGGGRGG GGGGDGNLKK LLIREKSNLG NGGLRMSNNN GKKIISGGGG  600
GGGGGERDGV VVVEGKKMNN NVDQKQEKGT PSIVLKKQGV ANFLKRIKQN SPSSQEKAKN  660
KDSGEEEVDE AAAVEGGRRE KNQSATSNNN NSNNVKKISG NLKKTIVKEV VDVGGVRRSS  720
GRRGEKEAGA SXXXAASRGR PPKRKAAMVG GGGGASDSAK GGGRSGGRDG GENFKKKPRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315320KKKRRR
2555563GGRGGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862065.10.0histone-lysine N-methyltransferase, H3 lysine-79 specific-like
TrEMBLA0A0K9S0C20.0A0A0K9S0C2_SPIOL; Uncharacterized protein
STRINGXP_010673541.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-29DNA-binding bromodomain-containing protein