PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_008990_hyhf.t1
Common NameSOVF_008990
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 290aa    MW: 32195.3 Da    PI: 4.7564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_008990_hyhf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-193785355
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Sp_008990_hyhf.t1 37 YLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 85
                       88******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-293693No hitNo description
SMARTSM003803.9E-3436100IPR001471AP2/ERF domain
PROSITE profilePS5103221.0613694IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-283794IPR001471AP2/ERF domain
PRINTSPR003671.2E-83748IPR001471AP2/ERF domain
PfamPF008473.5E-123785IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-193794IPR016177DNA-binding domain
PRINTSPR003671.2E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNTATNVAKT PSPRSKRKHN QQQQQQQDQS PPSTIRYLGV RRRPWGRYAA EIRDPTTKER  60
HWLGTFDTAE EAALAYDRAA RSMRGPSRAR TNFVYSDSPT GSSVTSILSP DDQSHLNQIF  120
FNNGPSSAQN QPNTIDQNIW ACWNANYPQP NNNNNNNYQP PVVNNEVTKE VELPPLPPDI  180
TSSYNMGFGM GMGMGMEMDL GMGMNMGQWV GNDPDFFGFS GQIESVGFDD IIGNSEPNMS  240
GTTSSGTITN DNSNQYNSIM QHSPLFSKMP VVSDPIFDGF DLGSSSSYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-193793359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861923.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A0K9S1V40.0A0A0K9S1V4_SPIOL; Uncharacterized protein
STRINGXP_010673983.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.14e-30ERF family protein