PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_009850_thwd.t1
Common NameSOVF_009850
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 684aa    MW: 74854.5 Da    PI: 8.6888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_009850_thwd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07575624147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sp_009850_thwd.t1 575 RRPFSVSEVEALVRAVEKLGTGRWRDVKLCSFenaKHRTYVDLKDKWKTL 624
                        678999********************99999899*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.81E-8379471IPR029071Ubiquitin-related domain
PROSITE profilePS500539.156385458IPR000626Ubiquitin domain
CDDcd017690.00691389455No hitNo description
PROSITE profilePS5129413.884570629IPR017930Myb domain
SMARTSM007172.2E-7574627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-9575625IPR009057Homeodomain-like
CDDcd116605.13E-16576626No hitNo description
SuperFamilySSF466891.35E-14576656IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MVLLKRTLDH GVNGYPSPAI PRAPRSIRKR GFRQKKREGG QVCAFELLAT VAGKLLEESE  60
CSSASSSAAV GFDQCGIDKN AAIKKELLDV DKTLGGEHDD QGSSEGSVFF SGLQRDTCKG  120
KLETVKEVTA DHVSLFASSA CSEKVDCESK LVTQKINDVF VKHSCKIDGS SPKCGESDDT  180
NLDNGLIRKL LCTNGDASGD ITTANKSSAP ANCEENVNLT LCRGSNPNAS SLKHGSDVKL  240
NCKDDDEILS RCSKPNNTMK AFRSPTCVED HKLLMSGCWK TVPKLKDDEP SNTDGGSKQN  300
YPCKRPSYEI DRSQRNTPFK KRRLLERSSV VTYDGGISCE SVSNSPEKEI DVEKNLSAGK  360
LHEGKGMPSS VFCRQKSCNS RNSQVRLSIK SFKVPELFIE VSESTTVGSL KKTVLEAVTT  420
ILGSGLRVGV LLQGKKIRDD SRTLLQSGIA QSDDMDTVGF MLEPNSPSQP SPPIYPEEPP  480
SPLPCDSPKF VNRSQVNPNG DSFAIKTPEK PSITYSNRSS GSIKDLVPST TELTDKTVSN  540
SKALVSVPEE SMEALTVVPM SQRSKRPDIG QRRTRRPFSV SEVEALVRAV EKLGTGRWRD  600
VKLCSFENAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQDLLDRVLA AQSYWSEHQA  660
KQHGKQQQQQ GIFPKLTDSV AGKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-515596631105Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855468.10.0telomere repeat-binding protein 3
TrEMBLA0A0K9RZZ30.0A0A0K9RZZ3_SPIOL; Uncharacterized protein
STRINGXP_010690776.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-111TRF-like 2